Vocabularies

Name Links
NIFSTD Ontology "The NIFSTD ontology is composed of a collection of OWL modules covering distinct domains of bio-medical reality...
DrugBank "The DrugBank database is a unique bioinformatics and cheminformatics resource that combines detailed drug (i.e...
IUPAC Biochemical Nomenclature "The Biochemical Nomenclature and Related Documents (1992) presents IUPAC-IUBMB (International Union of Biochemistry and Molecular Biology) Joint Commissions' recommendations; it includes sections on amino acids, peptides and proteins, enzymes, nucleotides, nucleic acids and protein synthesis, carbohydrates, lipids, etc."...
Transporter Classification System "The TC-DB website details a comprehensive classification system for membrane transport proteins known as the Transport Classification (TC) system...
Structural Classification of Proteins "SCOP contains the domains of all PDB entries available at the time of the current release's construction...
Chemical Entities of Biological Interest (ChEBI) "Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds...
Glycomics Ontology (GlycO) "The Glycomics Ontology (GlycO) focuses on the glycoproteomics domain to model the structure and functions of glycans and glycoconjugates, the enzymes involved in their biosynthesis and modification, and the metabolic pathways in which they participate...
Multiple Alignment Ontology "The goal of the MAO project is to develop a controlled, structured vocabulary, that will provide a common language not only for the construction of multiple alignments, but also for the numerous applications that exploit the information available in an integrated, global multiple alignment of a protein family...
Enzyme Nomenclature "By the late 1950's it had become evident that the nomenclature of enzymology, in the absence of any guiding authority, in a period when the number of known enzymes was increasing rapidly, was getting out of hand...
PANTHER Classification System "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System was designed to classify proteins (and their genes) in order to facilitate high-throughput analysis...
TErminology for the Description of DYnamics "The TErminology for the Description of DYnamics (TEDDY) project aims to provide an ontology for dynamical behaviours, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology."...
Lipid Classification System "The LIPID MAPS Lipid Classification System is comprised of eight lipid categories, each with its own sublassification hierarchy...
UniProtKB Keywords "UniProtKB Keywords constitute a controlled vocabulary with a hierarchical structure...
Semanticscience Integrated Ontology "The Semanticscience Integrated Ontology (SIO) provides a simple, integrated ontology of types and relations for rich description of objects, processes and their attributes."...